PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G165080.1.p
Common NameSb03g018690, SORBIDRAFT_03g018690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 257aa    MW: 29177.8 Da    PI: 6.8978
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G165080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.11.2e-12106193190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle....le 84 
                           kfY+ YA+evGF ++  ++k        +++   C++eg+++  kkk+e + r +++++t+C  k+k+k+ + ++k e++ +     l 
  Sobic.002G165080.1.p 106 KFYSIYAEEVGFGLCYGNNKP-------YSYIIHCNNEGNNTYFKKKEELRVRDNTSKKTHCMSKMKLKRIYdENKEEIAVVIeyvdLM 187
                           6**************998655.......58999**************999********************997666555443333339* PP

                  FAR1  85 HnHela 90 
                           HnH+++
  Sobic.002G165080.1.p 188 HNHPCF 193
                           ***976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-7106193IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLSCLSRASW RAQTTELAVG QSHDGAPAAN SEAGTSCRAD RSEDVVAGIS ETKTSSRCRF  60
SQMATVTADE IATSDAEKKY THKEDIDPAL IPRPGMSFRN REEARKFYSI YAEEVGFGLC  120
YGNNKPYSYI IHCNNEGNNT YFKKKEELRV RDNTSKKTHC MSKMKLKRIY DENKEEIAVV  180
IEYVDLMHNH PCFKKKQETI NLSEHKEKDP VFLEFVDDLQ AADVPHHSIQ NIVRDMHGGG  240
EHVPITKRDL ENRQLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457885.10.0hypothetical protein SORBIDRAFT_03g018690
TrEMBLC5XLB90.0C5XLB9_SORBI; Putative uncharacterized protein Sb03g018690
STRINGSb03g018690.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Representative plantOGRP3012351